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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattatatttgtgtcataattttggaggtcacattgagccttctttttctcctcagAGTCAAATAAATACAGGGCTGCTATTATCTGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGCAA

Basic information

species Glycine max
transcript GLYMA05G07540.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G07540.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G73990.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------------------gttattatatttgtgtcataatt--ttggaggtcaca-ttgagccttctttttctcctca-gAGTCAAATAAATACAGGGCTGCTATTATCTGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGCAA
                             || | |  |  |||  |  |   | | || ||| |  |     | || |||||  | | ||||| || ||||| | |||||| || ||| ||||||||||||||||||| |||||||| |||||||||||    
gtaggtctgtttattacgttttcatctactagtgtgctgttgtgttcgtcaatagcagctcagaactttatttcctctttcttttgaagAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT----

upper sequence: GLYMA05G07540.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------gttattatatttgtgtcataattttggaggtcacattgagccttctttttctcctcagAGTCAAATAAATACAGGGCTGCTATTATCTGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGCAA
                                              |||    ||||  ||| |  |||   || | |   || ||||| |||||||   |||| ||||| | ||| | ||||| ||| ||  | |||||||| || ||||| ||||||||||||||||||||    
ttcttttgcatatggaaaacaaattttgacttccaatgagtgcttattacatgatttaggtcttgcttt--aagctaatgctgggcctt-tttttctttccagATTCAAAAAGATATAAGGCTGTTATCATTCGCATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATTT----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatatttgtgtcataattttggaggtcacattgagccttctttttctcctcagAGTCAAATAAATACAGGGCTGCTATTATCTGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGCAA
                                ttgagccttctttttc  CT-rich tract
            tcataatttt  TA-rich tract