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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcccgcacgtggtcccactcaaaatatctgaaggaatcttatcttctgtgttttttacataccaaattgttcattagaatgtgctgtatgtctaattagGTACATGGCTTTGTTGAAGATGTAATGGGAAAAAAGGTTGCCACATTATTTGGCAAGTGGGATGACAGCATTTATTATGTTAATGGCGAAGTTAATGTGA

Basic information

species Glycine max
transcript GLYMA05G04340.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 8
lower sequence: AT4G12460.1 (Arabidopsis thaliana), 3'ss of exon 7
tgcccgcacgtggtcccactcaaaatatctgaaggaatcttatcttctgtgttttttacataccaaattgttcattag-aatgtgctg--tatgtctaattagGTACATGGCTTTGTTGAAGATGTAATGGGAAAAAAGGTTGCCACATTATTTGGCAAGTGGGATGACAGCATTTATTATGTTAATGGCGAAGTTAATGTGA
                       | ||     ||  ||    | ||  |||||||  |  |||       |||   |  ||  |  ||   |  | ||  |||||  |||| ||||| ||||||||||  |||||||||| ||| ||  ||||||| || ||| |||| ||| |||||||||||  ||| || |  |     |
--------------------gtgattacacagagatatgcactgttaagtgttttcgatctacgtggcatttctgaaataacttcatggtcaaatatatatagGTTAATGGTTTTGTAGAAGATGTAACTGGAAAAAAGGCTGCGACGGTATTTGGTAAATGGAATGATAGCCTTTATTATGTTGCTGGTGATGGAATCAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgttttttacataccaaattgttcattagaatgtgctgtatgtctaattagGTACATGGCTTTGTTGAAGATGTAATGGGAAAAAAGGTTGCCACATTATTTGGCAAGTGGGATGACAGCATTTATTATGTTAATGGCGAAGTTAATGTGA
      ttttttacata  TA-rich tract