1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgcccactgtccttgtaatgccaagtatcatactatctcacaaagtgattggatatatttcttcttctaacttcatagatttaaaatttcactttgtagAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATG
species | Glycine max |
transcript | GLYMA04G43520.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCT AATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTEST: gi|9903056|gb|BE612024.1|BE612024
genomic: CTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCTgtaagataat ... cactttgtagAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATT
EST: CTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCT AATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATT
genomic: CTGACCCTCCTCCAGGAAAGTTGGAGCTCTTCTCATATGAAAATAACCCTgtaagataat ... cactttgtagAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATT
gtgattggatatatttcttcttctaacttcatagatttaaaatttcactttgtagAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATG
ttctaac putative branch site (score: 1)
tttcacttt putative PPT
taacttcatagattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcccactgtccttgtaatgccaagtatcatactatctcacaaagtgattggatatatttcttcttctaacttcatagatttaaaatttcactttgtagAATGCTCGAATAGTGCGTGAGGCATTATGCGAATTGGAACTTCCTTACATTCTTCAAAATGTAGGAGAAGGGTCTCCTCGAATGAAGTTACTCTTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
-tgcccac
- - - - -gtccttg
- - - - - - - - -aatgcca
- - - - - - - - - - - - - - - - - - - - - - -gtgattg