1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgactatttttctttctctctctttgtatagattagcataatgtctccatgaacaatttttcttttcttttttgttcatttttattttgtttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTATGGGTTTTGGTGGTAGGATTTGGGT
species | Glycine max |
transcript | GLYMA04G43150.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAG AATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACEST: gi|151409205|gb|EV279013.1|EV279013
genomic: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagat ... ttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC
EST: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAG AATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACEST: gi|17401655|gb|BM178437.1|BM178437
genomic: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagat ... ttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC
EST: TTCCTGCTTTGGATCACATGGTTACCTTTGCTTCAGCACCGGCTACAGAG AATGCTGTGGAGAGACCACCATCAAAGGTAGGAGGCTGGGCAGGATTGTAC
genomic: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagat ... ttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC
tccatgaacaatttttcttttcttttttgttcatttttattttgtttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTATGGGTTTTGGTGGTAGGATTTGGGT
tttttcttttcttttt CT-rich tract
aatttttcttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgactatttttctttctctctctttgtatagattagcataatgtctccatgaacaatttttcttttcttttttgttcatttttattttgtttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTATGGGTTTTGGTGGTAGGATTTGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - -catgaac