1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtttttgtttctcttcttttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttacttcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCTGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGT
species | Glycine max |
transcript | GLYMA04G42250.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGEST: gi|37993896|gb|CF805642.1|CF805642
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGEST: gi|26048841|gb|CA785294.1|CA785294
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGEST: gi|14259525|gb|BG882433.1|BG882433
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGEST: gi|15662595|gb|BI699966.1|BI699966
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
ccaagtctctttgtgcaattacaaagagtgactgtaatggttacttcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCTGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGT
cttcactttc CT-rich tract
aattacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttgtttctcttcttttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttacttcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCTGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT