1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cacgctaattataccaaaagaattaagagattaagattcctctatttttggttattattattattaactaactatttacaggatcaattttgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCT
species | Glycine max |
transcript | GLYMA04G41600.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGTATGATGCCATAATTGTTGATTNNNCAGATCCCGTGG GTCCTGCCCAGGAACTTGTTGAGAAACCNNNNNNNGATACAATAGCTAGGGEST: gi|254327482|gb|GR837105.1|GR837105
genomic: GGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGgtatgtcgtt ... tgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGG
EST: -TGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGG GTCCTGCCCAGGAACTTGTTGAGAAACCNNNNNNNGATACAATAGCTAGGGEST: gi|18040670|gb|BM308964.1|BM308964
genomic: TTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGgtatgtcgtt ... tgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGG
EST: TTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGG GTCCTGCCCAGGAACTTGTTGAGAAACCNNNNNNNGATACAATAGCTAGGGEST: gi|51338286|gb|CO982152.1|CO982152
genomic: TTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGgtatgtcgtt ... tgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGG
EST: TTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGG GTCCTGCCCAGGAACTTGTTGAGAAACCNNNNNNNGATACAATAGCTAGGGEST: gi|254325923|gb|GR838804.1|GR838804
genomic: TTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGgtatgtcgtt ... tgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGG
EST: TTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGG GTCCTGCCCAGGAACTTGTTGAGAAACCNNNNNNNGATACAATAGCTAGGG
genomic: TTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGgtatgtcgtt ... tgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGG
ttttggttattattattattaactaactatttacaggatcaattttgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCT
aactaac putative branch site (score: 1)
ttattattattattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacgctaattataccaaaagaattaagagattaagattcctctatttttggttattattattattaactaactatttacaggatcaattttgcgatttagGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCT
cacgcta
- - - - - - - -aaaagaa