1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagttcttcattttgttgaatgataccaagaaagccgccagactcctcttttatctgttttataacatacacttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGG
species | Glycine max |
transcript | GLYMA04G40740.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATEST: gi|193539697|gb|FK498639.1|FK498639
genomic: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCgtaagttctt ... acttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTAT
EST: GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCC ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTAEST: gi|207762279|gb|GD731600.1|GD731600
genomic: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCgtaagttctt ... acttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTA
EST: GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCC ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTAEST: gi|193325939|gb|FK291022.1|FK291022
genomic: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCgtaagttctt ... acttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTA
EST: GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCC ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTAEST: gi|19453352|gb|BM954762.1|BM954762
genomic: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCgtaagttctt ... acttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTA
EST: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATEST: gi|19453608|gb|BM955018.1|BM955018
genomic: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCgtaagttctt ... acttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTAT
EST: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATEST: gi|192301101|gb|FG990141.1|FG990141
genomic: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCgtaagttctt ... acttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTAT
EST: GGACTCTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGATAGCTTAT
genomic: GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCgtaagttctt ... acttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTAT
ccaagaaagccgccagactcctcttttatctgttttataacatacacttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGG
ttataac putative branch site (score: 2)
cactttt putative PPT
ttttatctgttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttcattttgttgaatgataccaagaaagccgccagactcctcttttatctgttttataacatacacttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT