1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctaactttctattctacagaatgtatacttattctggcatattttcataataaatgtagttttcatgtatatcactcatactatttgttctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
species | Glycine max |
transcript | GLYMA04G40740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAG GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCEST: gi|193539697|gb|FK498639.1|FK498639
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCCEST: gi|207762279|gb|GD731600.1|GD731600
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCCEST: gi|193325939|gb|FK291022.1|FK291022
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCCEST: gi|193350079|gb|FK315753.1|FK315753
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG GGACTTTTGGCATTGTTGATTACACTAA
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAA
tcataataaatgtagttttcatgtatatcactcatactatttgttctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
tttgttctctattt CT-rich tract
ataaatgtagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaactttctattctacagaatgtatacttattctggcatattttcataataaatgtagttttcatgtatatcactcatactatttgttctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
- - - - - - - - - -gaatgta
- - - - - - - - - - - - - - - - ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactca