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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgccgagagttagttatagaatctgtaaatagttacattctaacttttgctttataaatggtttattttcagGGAGCAAGTGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTAATGGCTTCTCG

Basic information

species Glycine max
transcript GLYMA04G38320.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38320.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------gtgagtgccgagagttagttatagaatctgtaaatagttacattctaacttttgctttataaatggtttattttcagGGAGCAAGTGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTAATGGCTTCTCG
                          || | || |      | ||| |  |||||    ||| | |  |  | | |||  ||||   | |  ||| ||   ||||||| |  ||||| ||||||||||| |||||||| || ||||| |||||||| ||| | || ||||||||||| ||| |||||||
ggaattactaatttagcatatacttagttaatgacttcg--tggttttgaaatctaagcata-tgagttagttattttgactttcatagtatttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatctgtaaatagttacattctaacttttgctttataaatggtttattttcagGGAGCAAGTGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTAATGGCTTCTCG
                    ttctaac  putative branch site (score: 1)
                                            tttattttc  putative PPT
                                 tttataaatggtttat  TA-rich tract