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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctgggaaattttaggctgaagcgatatctaatatggatttaatagttctatatttgaatgctggtatgtaacctttttgtttgattttggaccttcagGAAACGGAAACCACCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAACTTGCATCAGCAACCTTCTTCAAATGCCATGCTTTGGCAAAAAACACC

Basic information

species Glycine max
transcript GLYMA04G37810.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208259092|gb|GE057555.1|GE057555
EST:     CATTCAGGGAATGAGTTCAACTGGGAACCTAGCTGAGTTTAATGCAGGAG                         GAAACGGAAACCACCCCCATCATGGACTTTATCATATGTGGAATGGGTCCA
genomic: CATTCAGGGAATGAGTTCAACTGGGAACCTAGCTGAGTTTAATGCAGGAGgtaagtttaa ... ggaccttcagGAAACGGAAACCACCCCCATCATGGACTTTATCATATGTGGAATGGGTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctatatttgaatgctggtatgtaacctttttgtttgattttggaccttcagGAAACGGAAACCACCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAACTTGCATCAGCAACCTTCTTCAAATGCCATGCTTTGGCAAAAAACACC
                                                ccttc  CT-rich tract
                              tttttgtttgatttt  TA-rich tract