1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctctactcatgcgattgatatactcctattaaattgcttattcaagaaaatgtgaaactcatgacataaatatggtcttattgctaactcatcctataacctatctgaaaccaaattgcagcttgtggtaattggtgctattgctaactcgtaaacttcatattgtaacaagcatgaccttgttcttgtctccacagGTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCTAGTTCTAACTCTCAAAATGAGGATCCAATATAAGAAGTGTTTATGTTACAAAG
species | Glycine max |
transcript | GLYMA04G36610.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGGATTGCTGCATGTGAAATGCGTGGACATGGGATAGAGTTAGAAG GTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCTAGTTEST: gi|214004304|gb|DB984778.1|DB984778
genomic: AGAAAGGATTGCTGCATGTGAAATGCGTGGACATGGGATAGAGTTAGAAGgtctctactc ... gtctccacagGTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCTAGTT
EST: AGAAAGGATTGCTGCATGTGAAATGCGTGGACATGGGATAGAGTTAGAAG GTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCTAGTTEST: gi|193334393|gb|FK299261.1|FK299261
genomic: AGAAAGGATTGCTGCATGTGAAATGCGTGGACATGGGATAGAGTTAGAAGgtctctactc ... gtctccacagGTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCTAGTT
EST: AGAAAGGATTGCTGCATGTGAAATGCGTGGACATGGGATAGAGTTAGAAG GTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGG
genomic: AGAAAGGATTGCTGCATGTGAAATGCGTGGACATGGGATAGAGTTAGAAGgtctctactc ... gtctccacagGTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGG
gctaactcgtaaacttcatattgtaacaagcatgaccttgttcttgtctccacagGTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCTAGTTCTAACTCTCAAAATGAGGATCCAATATAAGAAGTGTTTATGTTACAAAG
ccttgttcttgtctcc CT-rich tract
atattgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctactcatgcgattgatatactcctattaaattgcttattcaagaaaatgtgaaactcatgacataaatatggtcttattgctaactcatcctataacctatctgaaaccaaattgcagcttgtggtaattggtgctattgctaactcgtaaacttcatattgtaacaagcatgaccttgttcttgtctccacagGTTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCTAGTTCTAACTCTCAAAATGAGGATCCAATATAAGAAGTGTTTATGTTACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT