1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtatgaagttttcatcttctgtcacctgccaaaccaatgattattacagtttgacatataaactgctacatgtttactatgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTTGTAAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAG
species | Glycine max |
transcript | GLYMA04G30350.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAG-CTAACAA GATCTCCGAGGA-GATTATATCCGTTTCATTAAG-AG-AAATTTACA-TGTEST: gi|16348382|gb|BI973977.1|BI973977
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGT
EST: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAA GATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTEST: gi|14990789|gb|BI316462.1|BI316462
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGT
EST: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAA GATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATCTACAATGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGT
ccaatgattattacagtttgacatataaactgctacatgtttactatgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTTGTAAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAG
gtttgac putative branch site (score: 4)
attattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatgaagttttcatcttctgtcacctgccaaaccaatgattattacagtttgacatataaactgctacatgtttactatgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTTGTAAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA