1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggactaaaaacttaattaaccctataataaacttcctgcttttagatttgttcttaaacttgtctactgagtcactattaatggatgttatggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACTTTGTTTTTAGCATGCCTCAAGGATTTCGCAGACTTTGCCAAATCTAAG
species | Glycine max |
transcript | GLYMA04G26840.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCT GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACEST: gi|58023609|gb|CX710350.1|CX710350
genomic: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCT GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACEST: gi|22931617|gb|BU548756.1|BU548756
genomic: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTANNNACGAGCT GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACEST: gi|192308787|gb|FG999798.1|FG999798
genomic: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: ACCTACGAGCT GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
atttgttcttaaacttgtctactgagtcactattaatggatgttatggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACTTTGTTTTTAGCATGCCTCAAGGATTTCGCAGACTTTGCCAAATCTAAG
tattaat putative branch site (score: 2)
ttttc putative PPT
actattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggactaaaaacttaattaaccctataataaacttcctgcttttagatttgttcttaaacttgtctactgagtcactattaatggatgttatggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACTTTGTTTTTAGCATGCCTCAAGGATTTCGCAGACTTTGCCAAATCTAAG
- - taaaaac
- - - - - - - - - - - - - - - - -tcctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt