Sequence
atgc intronic sequence ATGC exonic sequence...cttaatatctcaattattttttttactcaataggagaaatttatacacctatagagaactatttactatacgaggccgtttctcaactgcttcattccagGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTG
Basic information
species | Glycine max |
transcript | GLYMA04G10090.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G103721_T01 (Zea mays), 3'ss of exon 8
----cttaatatctcaattattttttttactcaataggagaaatttatacacctatagagaactatttactatacgaggccgtttctcaactgcttcattcc--agGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTG
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caattctaaaatagtattcgatatttagattctg-actctggctatatgctttattatctcatgaattattctgtaaggtaa-----caattgtttttctgcaaagGTTCGTGGTTATGCTGTCAGCGTACTTGAAAGGGCTGATGATGAAGAATTACAGTGCTATTTACTCCAGTTAGTGCAAGCTCTTCGGTTTGAAAGATCTG
upper sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 8
----------------cttaatatctcaattattttttttactcaataggagaaatttata-cacctatagagaactatttactatacgaggccgtttctcaac-tgcttcattccagGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTG
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gtactacgagtgtccaatttacttttcttctgctcttctaattcgccactcgatctgcttggctgtcatcttggtatatttaa-atgtaggctcattcttcactacacttactgatagGTTCGAGCTTATGCTGTGAGTGTCCTGGAAAGAGCTGATGATGAAGAGCTTCAGTGTTACTTGCTTCAACTGGTTCAGGCTCTTCGTTTTGAACGCTCTG
upper sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 8
-cttaatatctcaattattttttttactcaataggagaaatttatacac-ctatagagaactatttactatacgaggccgtttctcaactgcttcattccagGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTG
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atttatccttatactagttgtatttgatctttaatttgtgttgttatgttccacacatcatt-ctgaatgaataaaattttattttaactccctt-caacagGTTCGTGCATATGCTGTCAGTGTTCTTGAAAGAGCTGATGATGAAGAGCTTCAATGTTACTTACTTCAACTGGTTCAGGCTCTTCGTTTCGAGCGCTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209713245|gb|BW681784.1|BW681784EST: ATGTTTGTGATGCACTGGAACTTTTGTCGCCTGTTTTTGAAAGTGAAGAG GTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGA
genomic: ATGTTTGTGATGCACTGGAACTTTTGTCGCCTGTTTTTGAAAGTGAAGAGgtaattttac ... ttcattccagGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacctatagagaactatttactatacgaggccgtttctcaactgcttcattccagGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTG
cttcattcc CT-rich tract
aactatttactata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttaatatctcaattattttttttactcaataggagaaatttatacacctatagagaactatttactatacgaggccgtttctcaactgcttcattccagGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT