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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattattttcttgtaataagcttttaaccaaaatttgtaaatgattacttatgttgttattttgtttgtcagGTGCAACAACCATCTGAAATTTTGGTTGAACATGATATGAATGATCTGTTACTGTATTCACCTGATCAGGTTAATTTGAAATCAGAAAAAGTTCTTAGTT

Basic information

species Glycine max
transcript GLYMA04G08550.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326888|gb|FK019195.1|FK019195
EST:     TTGATGTTGATTCTGAGATAAAGAATGATGCTAGTGCTGCTGCTGAGATT                         GTGCAACAACCATCTGAAATTTTGGTTGAACATGACATGAATGATCTGTTA
genomic: TTGATGTTGATTCTGAGATAAAGAATGATGCTAGTGCTGCTGCTGAGATTgtaagtatta ... tgtttgtcagGTGCAACAACCATCTGAAATTTTGGTTGAACATGATATGAATGATCTGTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcttttaaccaaaatttgtaaatgattacttatgttgttattttgtttgtcagGTGCAACAACCATCTGAAATTTTGGTTGAACATGATATGAATGATCTGTTACTGTATTCACCTGATCAGGTTAATTTGAAATCAGAAAAAGTTCTTAGTT
    ttttaac  putative branch site (score: 2)
 ttttgttt  putative PPT
 aaaatttgtaaatgat  TA-rich tract