1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG
species | Glycine max |
transcript | GLYMA04G08510.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAG CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGEST: gi|207686354|gb|GD668720.1|GD668720
genomic: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGG
EST: GCAAAATCATTTGATGCTCCAATAAAG CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTEST: gi|120494250|gb|EH222417.1|EH222417
genomic: GCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: CACCCCAGTGATGGTTCAGCGTTGTAAAATCATTTGATGCTCCAATAAAG CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTEST: gi|192327708|gb|FK020699.1|FK020699
genomic: CACCCCAGTGATGG-TCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAG CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTEST: gi|26267892|gb|CA818955.1|CA818955
genomic: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAG CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
gataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG
tcctaat putative branch site (score: 2)
ttatttt putative PPT
aaaaatgtaataaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG