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gtaagtatgaatgatttaacatgcctccttgtatcaatcctctgatttcattctaatagatgttttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT
species | Glycine max |
transcript | GLYMA04G05910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCTCCATTCCAGTTGAACTTTCACGGATTGGTAATTTGGATACACT GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGAEST: gi|208328618|gb|GE130826.1|GE130826
genomic: CAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: CAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACT GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGAEST: gi|193306549|gb|FK269703.1|FK269703
genomic: CAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: AATTGAACTCTCACGGATTGGTAATTTGGATACACT GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGAEST: gi|193374951|gb|FK339889.1|FK339889
genomic: AATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: CCAATTGAACTCTCACGGATTGGTAATTTGGATACACT GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGAEST: gi|193438022|gb|FK403147.1|FK403147
genomic: CCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: TAATTTGGATACACT GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
genomic: TAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
catgcctccttgtatcaatcctctgatttcattctaatagatgttttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT
ttctaat putative branch site (score: 2)
tgttttcttttc putative PPT
atttcattctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatgaatgatttaacatgcctccttgtatcaatcctctgatttcattctaatagatgttttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG