1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caaagtcttttttcggtagagctttattattatgttttccaatactttgggattctaattaccggtgcctttttcttttttctggatttgaaatttgaagTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAG
species | Glycine max |
transcript | GLYMA04G04530.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG TTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGAEST: gi|207812636|gb|GD783198.1|GD783198
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aaatttgaagTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGA
EST: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG TTAAGCTGCCCGAGTTACTGTTTCAEST: gi|192303059|gb|FG994177.1|FG994177
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aaatttgaagTTAAGCTGCCCGAGTTACTGTTTCA
EST: TGTCTTTCCTTTTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG TTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGA
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aaatttgaagTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGA
tttgggattctaattaccggtgcctttttcttttttctggatttgaaatttgaagTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAG
ttctaat putative branch site (score: 2)
tttttcttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagtcttttttcggtagagctttattattatgttttccaatactttgggattctaattaccggtgcctttttcttttttctggatttgaaatttgaagTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA