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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtctgcataaatttttgttccccgtctttcatttggcaaatcaagataattttgttttgattgatgttggcttgtttgttcttctgtagATCAATAGAGACCCCATGTCCAATGAGATGCTAAAAATGCGACAACAACTTGAGTATTTGCAGGCAGAACTTTGTGCTCGTGCTGGCGGCTCTTCTGAGG

Basic information

species Glycine max
transcript GLYMA04G04380.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G04380.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtgtct--gcataaattt---ttgttccccgtctttcattt-ggcaaatcaagataa-----ttttgttttgattgatgt----------tggcttgtttgttcttctgt-----------agATCAATAGAGACCCCATGTCCAATGAGATGCTAAAAATGCGACAACAACTTGAGTATTTGCAGGCAGAACTTTGTGCTCGTGCTGGCGGCTCTTCTGAGG
|||||| | |  | ||||   |   || |||    | || ||||| | || || |||||||       | | |||  | || ||            ||||  |  ||||  |||           || |||| ||||| || || |||||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||| ||||  || ||  ||||    |
gtaagttttttagaataagcctcaatttttctttcttttccattttgacacatgaagataaagattcctcgctttcttggaggtgccattaatgcagctttctacttctattgttgatgttaaacagGTCAACAGAGATCCAATATCCAATGAGATGTTAAAGATGCGCCAACAACTAGAGTATTTGCAGGCAGAACTGTGTGCACGTGGAGGAGGTGCTTCATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaaatcaagataattttgttttgattgatgttggcttgtttgttcttctgtagATCAATAGAGACCCCATGTCCAATGAGATGCTAAAAATGCGACAACAACTTGAGTATTTGCAGGCAGAACTTTGTGCTCGTGCTGGCGGCTCTTCTGAGG
                        gattgat  putative branch site (score: 4)
                                    cttgtttgttcttct  putative PPT
           ataattttgttttgat  TA-rich tract