1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatgcttcagtactatttacggtttgttcattttagtttatactttttctgcttttggatggacagtactaacatatctgatgggcatatgtattgcagAAGACTAGCGTCAGTAAAACTGTTCCGTTCAAGGTGCACGCAAAAGCAACTTGTAAAGGCATTAATTCCATTGTCCTCAAACGGGTTCAAGATCATGGTA
species | Glycine max |
transcript | GLYMA04G03240.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTGACTGATGATCTGTGTACCATACATTGAGCTCATGAGATATTTCAAG AAGACTAGCGTCAGTAAAACTGTTCCGTTCAAGGTGCACGCAAAAGCAACTEST: gi|22932253|gb|BU549392.1|BU549392
genomic: CTTGACTGATGATCTGTGTACCATACATTGAGCTCATGAGATATTTCAAGgtttttcccc ... tgtattgcagAAGACTAGCGTCAGTAAAACTGTTCCGTTCAAGGTGCACGCAAAAGCAACT
EST: CTTGACTGATGATCTGTGTACCATACATTGAGCTCATGAGATATTTCAAG AAGACTAGCGTCAGTAAAACTGTTCCGTTCAAGGTGCACGCAAAAGCAACT
genomic: CTTGACTGATGATCTGTGTACCATACATTGAGCTCATGAGATATTTCAAGgtttttcccc ... tgtattgcagAAGACTAGCGTCAGTAAAACTGTTCCGTTCAAGGTGCACGCAAAAGCAACT
ttttctgcttttggatggacagtactaacatatctgatgggcatatgtattgcagAAGACTAGCGTCAGTAAAACTGTTCCGTTCAAGGTGCACGCAAAAGCAACTTGTAAAGGCATTAATTCCATTGTCCTCAAACGGGTTCAAGATCATGGTA
atatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgcttcagtactatttacggtttgttcattttagtttatactttttctgcttttggatggacagtactaacatatctgatgggcatatgtattgcagAAGACTAGCGTCAGTAAAACTGTTCCGTTCAAGGTGCACGCAAAAGCAACTTGTAAAGGCATTAATTCCATTGTCCTCAAACGGGTTCAAGATCATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgatg