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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcatgaacttttcctcctattgacatgtatattctaagctgtctttttcttttacagGGTATCACAACTTACGAGTATGTTGTTGCCATGAGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTC

Basic information

species Glycine max
transcript GLYMA04G01720.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01720.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 3'ss of exon 8
---------------------gtatattcatgaacttttcctcctattgacatgt-----atattctaagctgtctttttcttttacagGGTATCACAACTTACGAGTATGTTGTTGCCATGAGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTC
                     || |||   |   | |     |   || | || |     | ||   ||  | |  | || |  | |||||||||||||| || ||||||||||||||||||||||| |  |||||||| ||||| || || || ||||| || || ||||| ||| | ||||| ||||
gtgcattcctgaaatgctgctgtctatctctccccctccaaactattttaaatatctgaaacatgaaaaattatgctcttttgctgcagGGTATCACAACCTATGAGTATGTTGTTGCCATGAGAACCCAGAGTGAACCTCCTGGACCATCTGTAGATGGAGGAGAGCAGCAAAGTATGCCATCTTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaacttttcctcctattgacatgtatattctaagctgtctttttcttttacagGGTATCACAACTTACGAGTATGTTGTTGCCATGAGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTC
               tattgac  putative branch site (score: 2)
                                    ctgtctttttctttta  putative PPT
                                         tttttctttta  TA-rich tract