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...aaatcaagactttcgctgttccctaaatattctaatgagatttgccatggtcaaacatgtcacggtttttaatcattaagtgtgtcttgaaacttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTCGCTATTACTA
species | Glycine max |
transcript | GLYMA04G01470.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACCTTGAACAAG GTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAEST: gi|207760815|gb|GD731926.1|GD731926
genomic: CACCTTGAACAAGgtaagtcagg ... aacttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAA
EST: GTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAG GTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAEST: gi|193396388|gb|FK363220.1|FK363220
genomic: GTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgtaagtcagg ... aacttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAA
EST: GTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAG GTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAEST: gi|193547427|gb|FK501924.1|FK501924
genomic: GTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgtaagtcagg ... aacttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAA
EST: ACCTTGAACAAG GTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAA
genomic: ACCTTGAACAAGgtaagtcagg ... aacttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAA
catggtcaaacatgtcacggtttttaatcattaagtgtgtcttgaaacttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTCGCTATTACTA
ttttaat putative branch site (score: 3)
tttttaatcattaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcaagactttcgctgttccctaaatattctaatgagatttgccatggtcaaacatgtcacggtttttaatcattaagtgtgtcttgaaacttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTCGCTATTACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
aaatcaag
- - - - - - - - - - ccctaaa
- - - - - - - - - - - - - - - - - - - - - - ccatggt
- - - - - - - - - - - - - - - - - - - - - - - - - -caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtc