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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcttctgcttctactcaatgccctctgtaatatggcccttctttcttgaaaaataatcagctggctgccaactaatatcattttcctatttactgtagGAAAAGAATGAGTCAAAACAAGAGCCACCCCATCAGAAGCAACCGAAATTTCAGCCTTTCATTGGGAACAAGTATTCCCTAAGGGGTTGACTGATATAAA

Basic information

species Glycine max
transcript GLYMA04G00980.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12689044|gb|BG155389.1|BG155389
EST:     GAAAGCTAGTGTTTGCATCGAATTTTTACCGCACAAAAGAAATAGGAAAG                         GAAAAGAATGAGTCAA
genomic: GAAAGCTAGTGTTTGCATCGAATTTTTACCGCACAAAAGAAATAGGAAAGgtaattcttc ... tttactgtagGAAAAGAATGAGTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgaaaaataatcagctggctgccaactaatatcattttcctatttactgtagGAAAAGAATGAGTCAAAACAAGAGCCACCCCATCAGAAGCAACCGAAATTTCAGCCTTTCATTGGGAACAAGTATTCCCTAAGGGGTTGACTGATATAAA
                          aactaat  putative branch site (score: 2)
                                  tcattttcctattt  CT-rich tract
                          aactaatatcatttt  TA-rich tract