Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgatctcaataatttctgatttgtggctattgagggacctaatagtttgataataaaaaaccaggttctctttactaataataatagtttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCAC

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208029688|gb|GD832066.1|GD832066
EST:     CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAG                         CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCTGGAGAGTTAACTGCT
genomic: CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGgtatatacat ... tttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
EST: gi|193374461|gb|FK340337.1|FK340337
EST:     CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAG                         CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
genomic: CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGgtatatacat ... tttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
EST: gi|192297484|gb|FG989519.1|FG989519
EST:     CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAG                         CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
genomic: CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGgtatatacat ... tttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
EST: gi|207696709|gb|GD676984.1|GD676984
EST:     CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAG                         CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACT
genomic: CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGgtatatacat ... tttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACT
EST: gi|193308761|gb|FK273595.1|FK273595
EST:     CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAG                         CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
genomic: CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGgtatatacat ... tttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
EST: gi|193331684|gb|FK293340.1|FK293340
EST:     CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAG                         CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
genomic: CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGgtatatacat ... tttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
EST: gi|193382272|gb|FK348031.1|FK348031
EST:     CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAG                         CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT
genomic: CAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGgtatatacat ... tttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttgataataaaaaaccaggttctctttactaataataatagtttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCAC
                            tttactaataataata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttgatctcaataatttctgatttgtggctattgagggacctaatagtttgataataaaaaaccaggttctctttactaataataatagtttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - -gtggcta
- - - - - - - - - - - - - - - - -tgaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa