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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...nnnnnnnnggttccccccccccccccccccccctccccatatggaatttattgctgctggaggggctgatcatttatggtattttgttcacaatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAG

Basic information

species Glycine max
transcript GLYMA03G42370.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42370.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 8
---------nnnnnnnnggttccccccccccccccccccccctccccatatggaatttattgctgctggaggggctgatcatttatggtattttgttcacaatttc-cagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAG
                 ||||       |            |||  |  |     ||   ||   ||       || |  |||||    |||| ||| |  ||||  |||||||||||| || |||||||||||  |||| |||||||| || ||||| || ||||| ||||||||||||||||| |||||||| || |||||||| |||
cataattctagatataaggtttgattttcaagtttttgggtctcttc-cactagcttagatgtctcta------cttacaatttaa---atttggtttatcattttacagGCCTGACACACTTGATCCAGCACTGTTACGCCCTGGACGGTTAGACCGCAAGGTTGAGTTTGGCCTTCCTGATTTGGAGAGTAGAACACAGATATTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214009507|gb|DB988648.1|DB988648
EST:     GATGTGTAACATGCTCAAGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|16277955|gb|BI942651.1|BI942651
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGNACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|208081456|gb|GD884336.1|GD884336
EST:     ATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: ATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGC-AACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|209718786|gb|BW671987.1|BW671987
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|37994041|gb|CF805787.1|CF805787
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCA-CACTACTACGACCTGGACGATTGGCCCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|213600067|gb|DB976026.1|DB976026
EST:     GAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTGCAACGACCTGGACGATTGGACCGTAA
genomic: GAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|209702900|gb|BW667435.1|BW667435
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|214007120|gb|DB986168.1|DB986168
EST:     GATGGGTTTGATGCTCGTCGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193685395|gb|FK626611.1|FK626611
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGGATCCAGCACTACTACGACCTGGACGATTGGACCGTA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGG-ATCCAGCACTACTACGACCTGGACGATTGGACCGTA
EST: gi|193658883|gb|FK607300.1|FK607300
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193429086|gb|FK396344.1|FK396344
EST:     CAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGATGATTGGACCGTAA
genomic: CAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193682156|gb|FK621280.1|FK621280
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193322175|gb|FK287053.1|FK287053
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193350834|gb|FK314156.1|FK314156
EST:     TGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: TGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193386094|gb|FK352408.1|FK352408
EST:     CTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: CTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|21601986|gb|BQ612317.1|BQ612317
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|214007458|gb|DB987315.1|DB987315
EST:     GAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|213611119|gb|DB974993.1|DB974993
EST:     AACATCAAAGTCTTGATGGCAACTAACAG                         GGCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: AACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattgctgctggaggggctgatcatttatggtattttgttcacaatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAG
                  ggctgat  putative branch site (score: 4)
                                                tttcc  putative PPT
                          atttatggtatttt  TA-rich tract