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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaactcacttttaagagctacgtacatgtcttcaagttaatactaataccttaccttacctctcatttggatttggtgcagGGATCTCTACGCAGAGTATATTCTGCACACCCTGAGGCGATAG

Basic information

species Glycine max
transcript GLYMA03G42280.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42280.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtaaactcacttttaagagctacgtacatgtcttcaagttaatactaataccttaccttacctctcat--ttggatttggt-gcagGGATCTCTACGCAGAGTATATTCTGCACACCCTGAGGCGATAG---------------------------------------------------------
    |||||||   ||||     ||   ||| | | ||  |     | ||  |   |||    |    | ||  ||| | |   |  ||||||||| ||||| ||||| ||||| |||||||||||| |||||                                                         
----gtaaactttttttt-----ctttttaccttttttacataatttgcttttcttttaagcaaatcttgatgtttgaaatcattcacagGGATCTTTACGCTGAGTACATTCTTCACACCCTGAGGAGATAGATGAAAAGAAGACTTCTTCAAGAACATTCCTGCCAATTTTTGGGTCTGCAATCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttcaagttaatactaataccttaccttacctctcatttggatttggtgcagGGATCTCTACGCAGAGTATATTCTGCACACCCTGAGGCGATAG
       aagttaatactaata  TA-rich tract