1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatttattatgaatatcttgcaaatcccactgaaaataatcaactgatgagtcgtcactcgttttatctaatgcaagttttcgtgtttccccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAGGCCAGTTGGAGCGGAATTGGTAGAAATT
species | Glycine max |
transcript | GLYMA03G41050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAG TATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGGEST: gi|193425543|gb|FK388648.1|FK388648
genomic: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctc ... cccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
EST: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAG TATAAGCGCTGCCCAATTACTTTAANGCCTTCAACGGTTGACCAGATAAGGEST: gi|207741506|gb|GD717656.1|GD717656
genomic: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctc ... cccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
EST: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAG TATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
genomic: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctc ... cccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
tgatgagtcgtcactcgttttatctaatgcaagttttcgtgtttccccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAGGCCAGTTGGAGCGGAATTGGTAGAAATT
atctaat putative branch site (score: 3)
ttttcgtgtttcccc putative PPT
ttttatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttattatgaatatcttgcaaatcccactgaaaataatcaactgatgagtcgtcactcgttttatctaatgcaagttttcgtgtttccccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAGGCCAGTTGGAGCGGAATTGGTAGAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - -cttgcaa
- - - - - - - - - - - - -tcccact
- - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - -actgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaagt