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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgaatttgtctttgtgtagctagggtctttcgttctttctattgtaatgatgtgcacatgatttactaatgatcacaacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG

Basic information

species Glycine max
transcript GLYMA03G39530.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453054|gb|BM954464.1|BM954464
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|192303326|gb|FG995620.1|FG995620
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|37997277|gb|CF808866.1|CF808866
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|31311467|gb|CD396670.1|CD396670
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|37996140|gb|CF807729.1|CF807729
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGANTTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGA-TTCTACTTTCAAG
EST: gi|298184842|gb|HO030055.1|HO030055
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|19269660|gb|BM885916.1|BM885916
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|302141262|gb|HO212138.1|HO212138
EST:     CCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: CCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|9987385|gb|BE661493.1|BE661493
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTNAACCTTTCTGAATCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|58022852|gb|CX709593.1|CX709593
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|58019780|gb|CX706522.1|CX706522
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|10231910|gb|BE800798.1|BE800798
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATGATATCTGAACCTTCCTGATTCT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCT
EST: gi|18711075|gb|BM522558.1|BM522558
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctttctattgtaatgatgtgcacatgatttactaatgatcacaacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
                                tactaat  putative branch site (score: 1)
                             atttactaat  TA-rich tract