1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagatcacgtttttatggaacctttgttttcttgtgtgtggaatagtgtgtactatgttttaagacaaaattaccttttactaatttgacctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGGTGGGGAACAACTGATGATG
species | Glycine max |
transcript | GLYMA03G38520.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGCAGTTTACAAACACATCACTGGTTATGAAEST: gi|31312156|gb|CD397359.1|CD397359
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|192323979|gb|FK015700.1|FK015700
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACA-GAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTEST: gi|18716048|gb|BM522863.1|BM522863
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACT
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|9899704|gb|BE608672.1|BE608672
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: TTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|58018606|gb|CX705348.1|CX705348
genomic: TTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|298182905|gb|HO028118.1|HO028118
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTGCCGTTTATGAG GATTTTGCTTACTACAAATCAGGAG-TTACAAACACATCACTGGTTATGAAEST: gi|151400974|gb|EV270788.1|EV270788
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|18719713|gb|BM523220.1|BM523220
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|17402160|gb|BM178942.1|BM178942
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|151411964|gb|EV281775.1|EV281775
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCAEST: gi|8670417|gb|BE191524.1|BE191524
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCANGAGTTTACAAACACATCACTGGTTATGAAEST: gi|6666111|gb|AW277570.1|AW277570
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAAEST: gi|254336334|gb|GR842513.1|GR842513
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
EST: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAG GATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
genomic: CGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaa ... ctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAA
gtgtgtactatgttttaagacaaaattaccttttactaatttgacctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGGTGGGGAACAACTGATGATG
cctcttcac CT-rich tract
aaaattaccttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagatcacgtttttatggaacctttgttttcttgtgtgtggaatagtgtgtactatgttttaagacaaaattaccttttactaatttgacctcttcacagGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGGTGGGGAACAACTGATGATG
- - - - - - - - - -acctttg
- - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - tgtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaaa