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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaacttgggcagcagtcatttctttgagtatatatttgatatgtacgtgtatcagctgtaattctcaatatgcaaatacctgagcattttgatttggccatgttaattacaatgtgttgttatatccaaatgctctttgttttgaaatgttgtaaagacaattaatttgttgggctgttatatctttgtagTTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTTATCTGGATGCGTTTTCTATCACAAAAGATACCTTTTATTCTTATATATC

Basic information

species Glycine max
transcript GLYMA03G36910.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G03200.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtttaacttgggcagcagtcatttctttgagtatatatttgatatgtacgtgtatcagctgtaattctcaatatgcaaatacctgagcattttgatttggccatgttaattacaatgtgttgttatatccaaatgctctttgttttgaaatgttgtaaagacaattaatttgttgggctgttatatctttgtagTTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTTATCTGGATGCGTTTTCTATCACAAAAGATACCTTTTATTCTTATATATC
                                                                                                       |  |   |    ||| | |  |||  |||| |  || |          |||| || | |     |   |||| |||  || ||       || |||||| ||||||||||| ||||| |||||||||||||| || || ||||| || || || |  |||   || || || ||     | ||||||||| |  |
-------------------------------------------------------------------------------------------------------gtaaaacttcaaacagtatcctgtagtatcaaggtgatg-------aaaaatattttgagattgacgcattttttg--ctatttgtctggtgcagTTCCACATTTTGAGAAAATGCTGTATGATCAAGGGCAACTAGCTAATGTGTACCTCGACGGTTTTAGCATTACCAAGGACGTTATGTATTCTTATGTGGC

upper sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtttaacttgggcagcagtcatttctttgagtatatatttgatatgtacgtgtatcagctgtaattctcaatatgcaaatacctgagcattttgatttggccatgttaattacaatgtgttgttatatccaaatgctctttgttttgaaatgttgtaaagacaattaatttgttgggctgttatatctttgtagTTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTTATCTGGATGCGTTTTCTATCACAAAAGATACCTTTTATTCTTATATATC
                                                                                           | |  |   |      ||||   ||    |  ||| | | |   | |  ||| || ||     | |||| |  | |  |||       || || | |    ||| |||||| ||||||||||| ||| | ||||| || |||||||| || |||| |||||| ||||  ||||| ||||||||||||  ||| ||||| | | | ||
-------------------------------------------------------------------------------------------cttcctttctcatttttgttggataactggctttgctctgtagcatttatctatggtt-attgttttgtgataatagctaa------aggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208063060|gb|GD860962.1|GD860962
EST:     TCATATTGGAGGGGGATTTCACAGATACAGTGTGGATGAGTGCTGGCATG                         TTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTT
genomic: TCATATTGGAGGGGGATTTCACAGATACAGTGTGGATGAGTGCTGGCATGgtaagtttaa ... atctttgtagTTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTT
EST: gi|151394229|gb|EV264100.1|EV264100
EST:     TCATATTGGAGGGGGATTTCACAGATACAGTGTGGATGAGTGCTGGCATG                         TTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTT
genomic: TCATATTGGAGGGGGATTTCACAGATACAGTGTGGATGAGTGCTGGCATGgtaagtttaa ... atctttgtagTTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttgaaatgttgtaaagacaattaatttgttgggctgttatatctttgtagTTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTTATCTGGATGCGTTTTCTATCACAAAAGATACCTTTTATTCTTATATATC
                       aattaat  putative branch site (score: 3)
                                            tatcttt  putative PPT
                taaagacaattaattt  TA-rich tract