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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaccgaaataaccacaaggagttttcatatattggtacatatatttatgctgtaaacacttcaacttgttgttccttgttgccatgtatttatgcttgtctttctttgttttgaactgcagAAACTGAGATTGCAAGAAACTGAAGGTTGTTTTGTAGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCAGAAAAAGGCTTCCTGGATGCAG

Basic information

species Glycine max
transcript GLYMA03G36430.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 8
gtaaaaccgaaataaccacaa-ggagttttcatatattggtacatatatttatgctgtaaacacttcaacttgttgttccttgttgccatgtatttatgcttgtctttctttgttttgaactgcagAAACTGAGATTGCAAGAAACTGAAGGTTGTTTTGTAGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCAGAAAAAGGCTTCCTGGATGCAG
|| | |   ||| ||||      ||  ||  ||  | | ||| |   |   |   |     ||| ||    |||| ||  |  ||  | | | |  ||  |         ||||| | || ||||||||||||||    | ||||   |  ||   ||| | |   |||| ||||| ||||| |||||| |||| |||||||| |||| ||||||||||||||| |
gtgagagacaaagaaccttgttagaaattatatgaagtagta-acgcaaaaaatttcctttcacgtc--tctgttcttattcattttctt-tctccatattctaaggatgttgttctaaaatgcagAAACTGAGAGAAGAGGAAAGAAATAGTGAGTTTTTGGTATTGAAGAAGCGGGCATTAAATGATCGACTGATGCTTGCTGAAAGAGGCTTCCTGGATGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326988|gb|FK015185.1|FK015185
EST:     CAATTGAAGAATTTGCTTCTGCTGCCAAGGAAGCTGATGATGAAATAAAG                         AATCTGAGATTGCAAGAAACTGAAGGTTGTTTTGTAGATATGAAAAAGCGA
genomic: CAATTGAAGAATTTGCTTCTGCTGCCAAGGAAGCTGATGATGAAATAAAGgtaaaaccga ... tgaactgcagAAACTGAGATTGCAAGAAACTGAAGGTTGTTTTGTAGATATGAAAAAGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgttccttgttgccatgtatttatgcttgtctttctttgttttgaactgcagAAACTGAGATTGCAAGAAACTGAAGGTTGTTTTGTAGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCAGAAAAAGGCTTCCTGGATGCAG
                            cttgtctttctttgtt  CT-rich tract
                 atgtatttat  TA-rich tract