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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgggaacaatgcatatttaattaattgcgaacacatcatctcttctgtcaatcacttctgatctccataaattgttaactttcattttctccttggctctgtagGTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCAACAACACAGTTAGTTATTGGAAAAATTGCCAA

Basic information

species Glycine max
transcript GLYMA03G35830.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35830.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G11620.3 (Arabidopsis thaliana), 3'ss of exon 8
gtgatgggaacaatgcatatttaattaattgcgaacacatcatctcttctgtca--atcacttctgat-ctccataaattgttaactttcattttctccttggctctgtagGTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCAACAACACAGTTAGTTATTGGAAAAATTGCCAA
              | |||  |   |   |   |    |  |  |  ||  |||  ||  |||    | ||   | | || |    | | ||| |||     ||| || |||||  |||||||||||| || |||||||||||||| || |||| ||| |||||||  || | | | ||||| ||| ||||   
--------------gtatagatggcttcctctaagagtagtactttctccatcacaatttctttcagtgctatgtgatttttcttatattattctctggaatgctttgcagGTGGTATATTGCATTGGCCTATATCCATTTTTGACTTTGAACCAACAATCAACAAAGCAATCATTAATTGGCAAACTTGCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314238|gb|FK006976.1|FK006976
EST:     CTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAG                         GTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCA
genomic: CTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAGgtgatgggaa ... ggctctgtagGTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCA
EST: gi|192314239|gb|FK006977.1|FK006977
EST:     CTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAG                         GTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCA
genomic: CTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAGgtgatgggaa ... ggctctgtagGTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCA
EST: gi|151395111|gb|EV264982.1|EV264982
EST:     CTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAG                         GTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCA
genomic: CTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAGgtgatgggaa ... ggctctgtagGTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcacttctgatctccataaattgttaactttcattttctccttggctctgtagGTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCAACAACACAGTTAGTTATTGGAAAAATTGCCAA
                       tgttaac  putative branch site (score: 2)
                             ctttcattttctcctt  CT-rich tract
                 ataaattgttaacttt  TA-rich tract