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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaggtgtatacaagtgtgaagtgtgtatttatttttgatgccgaagtagtgcttaatatttgagttgtatttacatctttcaaaatgttaagcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG

Basic information

species Glycine max
transcript GLYMA03G34890.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193477646|gb|FK442277.1|FK442277
EST:     GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCG                         GAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
genomic: GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
EST: gi|33387541|gb|CA850748.1|CA850748
EST:     GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCG                         GAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
genomic: GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
EST: gi|207747357|gb|GD718410.1|GD718410
EST:     GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCG                         GAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTT
genomic: GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTT
EST: gi|208154550|gb|GD956695.1|GD956695
EST:     GGATCAGGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG                         GAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
genomic: GGATCAGGTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
EST: gi|254319234|gb|GR830582.1|GR830582
EST:     GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCG                         GAGGTTGCTGTTAAAATTCTGATGGAACA-GACTTCAAAGGTGAACGCTTC
genomic: GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
EST: gi|254324292|gb|GR840609.1|GR840609
EST:     GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCG                         GAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
genomic: GTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtgcttaatatttgagttgtatttacatctttcaaaatgttaagcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG
     gcttaat  putative branch site (score: 4)
       ttaatatttgagttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaggtgtatacaagtgtgaagtgtgtatttatttttgatgccgaagtagtgcttaatatttgagttgtatttacatctttcaaaatgttaagcactgcagGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - -aagtgtg
- - - - - - - - - - gtgtgta
- - - - - - - - - - - - - - - - - -tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - gtgctta