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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaataagcattcttggcttagttatttgataactttcactgatttctaagtagtaagttttatatgattttgggctgctaacctacattggttgtttttgtgttcaaatatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCATTTCTTCATCTTCCTCTTTATC

Basic information

species Glycine max
transcript GLYMA03G34800.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788074|gb|BG650666.1|BG650666
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: gi|6481594|gb|AW200865.1|AW200865
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: gi|193384740|gb|FK351082.1|FK351082
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: gi|51336435|gb|CO980301.1|CO980301
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: gi|57574731|gb|CX547706.1|CX547706
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgattttgggctgctaacctacattggttgtttttgtgttcaaatatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCATTTCTTCATCTTCCTCTTTATC
             tgctaac  putative branch site (score: 1)
                                        ttcaaatatcatta  TA-rich tract