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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcttccactaatattcgacattggcattctttgaaaaaagctgtttgtagttaatttacattgtttatgaaaatttattcatcttttggccactgaatattccaagctgagatatatcatatatccatatatcatctcacgtgacatttttatttgcagGCCTTCAAGTGCCAGAAACTCCGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCGCGTAGGCTATCTGATTTCTCTACA

Basic information

species Glycine max
transcript GLYMA03G34080.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34080.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 8
gtagcttccactaatattcgacattggcattctttgaaaaaagctgtttgtagttaatttacattgtttatgaaaatttattcatcttttggccactgaatattccaagctgagatatatcatatatccatatatcatctcacgtgacatttttatttgcagGCCTTCAAGTGCCAGAAACTCCGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCGCGTAGGCTATCTGATTTCTCTACA
                                          |  |  |  | | ||||   ||   ||    |    ||||  ||| ||   | |   ||| |       | |  ||  |||       | || ||   |        | || || ||||||||||| ||||| ||||| || |||||||||||||||||||| ||||| || || ||||| || ||||| || || ||  |||||||||| |||||||| 
------------------------------------------gtagcctccactaaattcttatctctttcatatggatattt-tctattattc-ccacatactg------gtgtcatggcatgctctactttaacactgc--------tcttcatctgcagGCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTCCTCCTATGGTCGATCACCTTATTCACGCCGGCTATCTGACTTCTCTACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208329978|gb|GE129795.1|GE129795
EST:     ATAATGCTAGAAAGAGTAGTGCAAG                         GCCTTCAAGTGCCAGAAACTCCGTAAGCTCACCAATAATTGCTAGGAATTC
genomic: ATAATGCTAGAAAGAGTAGTGCAAGgtagcttcca ... ttatttgcagGCCTTCAAGTGCCAGAAACTCCGTAAGCTCACCAATAATTGCTAGGAATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgagatatatcatatatccatatatcatctcacgtgacatttttatttgcagGCCTTCAAGTGCCAGAAACTCCGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCGCGTAGGCTATCTGATTTCTCTACA
                             atctcac  putative branch site (score: 3)
                                          tttttattt  putative PPT
       atatatcatatatcca  TA-rich tract