1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttacattctttgtgatgctttccattgctgttaatatgttgcaattgtatatgttggctgttgtatttctttccttcaaatgattaaattcttcagtagGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTGCTGCATGTGGTT
species | Glycine max |
transcript | GLYMA03G34050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAG GGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATATEST: gi|7588625|gb|AW704417.1|AW704417
genomic: ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaattt ... tcttcagtagGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATAT
EST: ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAG GGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATAT
genomic: ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaattt ... tcttcagtagGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATAT
ttgtatatgttggctgttgtatttctttccttcaaatgattaaattcttcagtagGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTGCTGCATGTGGTT
ttcttc CT-rich tract
ttcaaatgattaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacattctttgtgatgctttccattgctgttaatatgttgcaattgtatatgttggctgttgtatttctttccttcaaatgattaaattcttcagtagGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTGCTGCATGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- tacattc
- - - - - - -tgatgct
- - - - - - - - - - - ccattgc
- - - - - - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttggc