1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tactgaggcacagccaggatttcgtaaatagacattggtagtgacaagcaagatgccaattttgtttcatgattcattccttattgttttatgtttgtagGAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAGTGCGTGAGAGCTGGCTGTTATGCAGCAAACGTTATCATCCA
species | Glycine max |
transcript | GLYMA03G33910.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAG GAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCAEST: gi|254347728|gb|GR853977.1|GR853977
genomic: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAGgtactgtgct ... atgtttgtagGAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAG GAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCAEST: gi|193442655|gb|FK408284.1|FK408284
genomic: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAGgtactgtgct ... atgtttgtagGAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAG GAGATGCATTTGTCGGAGGATTTCTTTCTEST: gi|193478080|gb|FK440625.1|FK440625
genomic: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAGgtactgtgct ... atgtttgtagGAGATGCATTTGTCGGAGGATTTCTTTCT
EST: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAG GAGATGCATTTGTCGGAGGATTTCTTTEST: gi|7145825|gb|AW507747.1|AW507747
genomic: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAGgtactgtgct ... atgtttgtagGAGATGCATTTGTCGGAGGATTTCTTT
EST: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAG GAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
genomic: CCCTGTGCAACTTTTGCCTAAAGAGAAACTAGTTGATGCAAATGGAACAGgtactgtgct ... atgtttgtagGAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
aagcaagatgccaattttgtttcatgattcattccttattgttttatgtttgtagGAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAGTGCGTGAGAGCTGGCTGTTATGCAGCAAACGTTATCATCCA
ttattgttttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgaggcacagccaggatttcgtaaatagacattggtagtgacaagcaagatgccaattttgtttcatgattcattccttattgttttatgtttgtagGAGATGCATTTGTCGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAGTGCGTGAGAGCTGGCTGTTATGCAGCAAACGTTATCATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT