1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atcatagcatgagtttgaattgagatgacttttacttgtcttgtgtgtttctttatgcttcttgagataccttctcttacttgccgttcttttattgcagCGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGGCTTATCAGTATTTCTTGTATTTTCTTGGTAATATCGTGGTGTGACTCGT
species | Glycine max |
transcript | GLYMA03G33680.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA CGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGGEST: gi|208105856|gb|GD903691.1|GD903691
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttct ... tttattgcagCGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGG
EST: TTTGGGAATTGCTGCTTATTTGTACAA CGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGGEST: gi|31471750|gb|CD413778.1|CD413778
genomic: TTTGGGAATTGCTGCTTATTTGTACAAgtaaggttct ... tttattgcagCGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGG
EST: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA CGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGG
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttct ... tttattgcagCGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGG
tgtttctttatgcttcttgagataccttctcttacttgccgttcttttattgcagCGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGGCTTATCAGTATTTCTTGTATTTTCTTGGTAATATCGTGGTGTGACTCGT
ctcttac putative branch site (score: 3)
ccttctcttacttgcc CT-rich tract
ttcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatagcatgagtttgaattgagatgacttttacttgtcttgtgtgtttctttatgcttcttgagataccttctcttacttgccgttcttttattgcagCGTGCTAAAGAAATGATACGGCATAGAAGACCATTAGATCAATTTGTATGGCTTATCAGTATTTCTTGTATTTTCTTGGTAATATCGTGGTGTGACTCGT
- - - gcatgag
- - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct