Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaaaaatggaaattacaactttcttgtgatattgggaaaaattaacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATACGGCTCCCTACACGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG
Basic information
species | Glycine max |
transcript | GLYMA03G33410.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33410.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 3'ss of exon 8
----aaaaaaaaatggaaattac---aactttcttgtgatattgggaaaaattaacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATACGGCTCCCTACACGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG
| | | | ||||| || || | | |||| | || | | | |||| || | | | | | | |||| | ||||||||||||||||| |||||||| || ||||| || ||||| || || ||| || |||| |||||| |||||||||| ||||| |||||||| |||||
attattagagtagtctaaattgacggaatgcatttcctaaagatggaagccgtttcaaaatttatttcagca-------tttctcagtctagaaaattgtttctcagGTGACATATAATACACTTCTTAAAGCACGAAGCAAATATGGTTCTTTACTTGAAGTGCGGCAATGCTTGGCTATATATCAGGACATGCGAAATGCAGG
upper sequence: GLYMA03G33410.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 8
aaaaaaaaatggaaattacaactttcttgtgatattgggaaaaattaacagagtatgcttcatcaacttatctctattgattt-----tgttaattatc-tctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATACGGCTCCCTACACGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG
|||| | || | | | | | | || | ||| | | || | || | || ||| | || | | ||||||||| ||||| |||||| | | || || |||| |||||| ||| |||| || || ||||| |||||||||||||| ||| ||||||| || |||||
------tgtcataaatcaattgggtcctaggccaatttaacttgcatatggatgaggctgctctgagttgtgtccacagaaaccaacatgtaagttgttatttcagGTGACCTATAATACACTTTTAAGAGCTCGAAGTAGATACGGTTCCTTACATGAAGTACAACAGTGCCTGGCTATATATCAGCATATGCGGAAAGCAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATACGGCTCCCTACACGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG
ttatctctc CT-rich tract
tctattgattttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaaaaatggaaattacaactttcttgtgatattgggaaaaattaacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATACGGCTCCCTACACGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG
aaaaaaa
- - - - - - - - - - - - tcttgtg
- - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct