Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatagtttataattcccaatccccccttactccaccagtgtctgcctttattttaattccatttctaatgctagacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG

Basic information

species Glycine max
transcript GLYMA03G33360.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33360.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 3'ss of exon 8
gtgcatagtttataattcccaatccccccttact-ccaccagtgtctgcctttattttaattccatttctaatgctagacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG
               | | || |      || || | |  ||  | |     ||       |    || | |  ||   |||| ||||| ||||| |||||||| ||||| ||||| ||||||||||||||| |  |  |||  || |||||||||   |||||||||
--------------gtgcgcatttttttttttctgctatgagcattttatactacaggctgtgtcattttcacacttatcttggcagGTAACTGCGAACATGAGAGGAAGTAGTGCGGAGGAAGTGGCTGAGCGGGTTTTGACCCAGCCATCATTATCTGGTTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492359|gb|EH220526.1|EH220526
EST:     AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACG                         GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
genomic: AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACGgtgcatagtt ... gacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
EST: gi|10256425|gb|BE824191.1|BE824191
EST:     AGATGCTTGAGAGGTTNNAAGCACATNNGAGGGCCATTGGGCAGTTCACG                         GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
genomic: AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACGgtgcatagtt ... gacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
EST: gi|58017604|gb|CX704346.1|CX704346
EST:     AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACG                         GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
genomic: AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACGgtgcatagtt ... gacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
EST: gi|51334857|gb|CO978723.1|CO978723
EST:     AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACG                         GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
genomic: AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACGgtgcatagtt ... gacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
EST: gi|58014287|gb|CX701029.1|CX701029
EST:     AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACG                         GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
genomic: AGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCATTGGGCAGTTCACGgtgcatagtt ... gacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actccaccagtgtctgcctttattttaattccatttctaatgctagacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG
                                  ttctaat  putative branch site (score: 2)
                  tttattttaattccat  TA-rich tract