Sequence
atgc intronic sequence ATGC exonic sequencegttagaaaatctaatatccatcttgtatcctattagtattgttatttgttagtgcagttgttagggtaagttcaaggttcctcaaaattttatgtgggagagctcatgtttttttgtgcagGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGG
Basic information
species | Glycine max |
transcript | GLYMA03G33080.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33080.1 (Glycine max), 3'ss of exon 8
lower sequence: AC182617.3_FGT001 (Zea mays), 3'ss of exon 7
gttagaaaatctaatatccat-cttgtatcctattagtattgttatt-tgttagtgcagttgttagggtaagttcaaggttcctcaaaattttatgtgggagagctcatgtttttttgtgcagGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGG
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--------ggctaaaatatatgtttgactttaagtgacacctctgttatatttgtgcattcgtcatttggagt----gaatatgcaaaat---------gaatgttaaggtttgactgt--agGAGCAACTCTTGCCTGTGGTACTGGTGCTTGTGCAGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGG
upper sequence: GLYMA03G33080.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G130332_T03 (Zea mays), 3'ss of exon 7
gttagaaaatctaatatccatcttgtatcct--attagtattgttatttgttagtgcagttgttagggtaagttcaaggttcctcaaaattttatgtgggagagctcatgtttttttgtgcagGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGG
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-----taatgcaaatgcatatactgtatttttgatcttaagtgacacctctttttatatttatgcgg---agt----gggtatgcaaaat-----------gaactttaaggtttgactgtagGAGCAACTCTTACCTGTGGTACTGGTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGG
upper sequence: GLYMA03G33080.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G53580.1 (Arabidopsis thaliana), 3'ss of exon 7
gttagaaaatctaatatccatcttgtatcctattagtattgttatttgttagtgcagttgttagggtaagttcaaggttcctcaaaattttatgtgggagagctcatgtttttttgtgcagGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGG
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-------------gtccgcaaattccccccaatcttcgaatataattctcagt----tgattataaacagtctctgtatccttatatgctta---atgcttacgcatacttaaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG
upper sequence: GLYMA03G33080.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0040g02540.t01 (Vitis vinifera), 3'ss of exon 7
-------------gttagaaaatctaatatccatcttgtatcctattagtattgttatttgttagtgcagttgttagggtaagttcaaggttcct----caaaattttatgtgggag-----agctcatgtttttttgtgcagGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGG
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gttagttcttactacctgaaaattgtgcagtcactgtaatttatattgcctatgtaaattgt----gcagtcactgtaataggagcaatgggcctgttttggttgtttatttcggaagcttaatcctatcattctgagtgcagGAGCAACTCTAGCCTGTGGAACTGGAGCTTGTGCAGTGGTTGTTGCAGCAGTTCTTGAGGGTCATGCTGGGAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagttcaaggttcctcaaaattttatgtgggagagctcatgtttttttgtgcagGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGG
tgttttttt CT-rich tract
tcaaaattttatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagaaaatctaatatccatcttgtatcctattagtattgttatttgttagtgcagttgttagggtaagttcaaggttcctcaaaattttatgtgggagagctcatgtttttttgtgcagGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT