1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatccttccaaaaatgcaaattctaatgtttggttttcaaattttctatttgttaacgtctatgtacatgattaaatcatgaaatgcgttggtccttttcagtgcagcatgtgaaatgaatgttattgttgttttccttcataaaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT
species | Glycine max |
transcript | GLYMA03G33000.5 |
intron # | 8 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAAGAAGTCGCAGTAAACGACTTTTTGCCTGCCTEST: gi|10236851|gb|BE805739.1|BE805739
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCT
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTGTTTTGAAGACT ACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTGTTGCCTGCCTEST: gi|192296495|gb|FG989111.1|FG989111
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCT
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTCTTGAAGACT ACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTEST: gi|192295958|gb|FG989380.1|FG989380
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCT
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGA-TGAAAACAAG-AAGTCGCAGTAAACGACTTTT-GCCTGCCTEST: gi|16105384|gb|BI893124.1|BI893124
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCT
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACNAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCEST: gi|192324459|gb|FK015810.1|FK015810
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCC
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTT-GAAGACT ACAAGAAGAATGAAAACAAAGAAGTCGCAGTAAACGACTTTTTGCCTGCCTEST: gi|8827754|gb|BE211484.1|BE211484
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCT
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGGTTTTTTGAAGACT ACAAGAAGAATGAAAACCAGGAAAGTCG-AGTAAACGACTTTATGCCTGCCEST: gi|17022987|gb|BM094021.1|BM094021
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAA-GTCGCAGTAAACGACTTTTTGCCTGCC
EST: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCT
genomic: GGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCT
tcagtgcagcatgtgaaatgaatgttattgttgttttccttcataaaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT
ttccttcat putative branch site
aaatgaatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttccaaaaatgcaaattctaatgtttggttttcaaattttctatttgttaacgtctatgtacatgattaaatcatgaaatgcgttggtccttttcagtgcagcatgtgaaatgaatgttattgttgttttccttcataaaggatttagACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT