Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcgcctagttatctcggatttatcacaattttgatgcttttgaaattattaatttttgatctgataatcagGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATTAAAACG
Basic information
species | Glycine max |
transcript | GLYMA03G32710.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G32710.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os02g40430.1 (Oryza sativa), 3'ss of exon 9
-----------------gtaagttcgcctagttatctcgga---tttatcacaattttgatgcttttgaaatt--attaat-ttttgatctgataatcagGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATTAAAACG
||| | ||| | | | | ||| | | | || ||| | | ||| | ||||| || ||||||| ||||||||||| |||||||| ||||||||||| ||||| || || || || |||||||| |||||
tttattccggtaaccatagaagctgtttcagtgttttgcaacagtaagtcagtactcttatacttcctcagtagggctaacatactgatcaaattatcagGTACTTTTCAAGCTTGTTGTGATAACTGTGCTTGTTATTGCTGAATCCGCCGACAACTGCATAAAAACT
upper sequence: GLYMA03G32710.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G20190.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagttcgcctagttatctcggatt--tatcacaattttgatgcttttgaaattattaatttttg-atctgataatcagGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATTAAAACG
||||| | | | || | | ||| || | | || ||||| || | || || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
gtaagcttaacctcctgtcgtttactactatggcattcaacacatacacattcttgttaatattggtatatggtaatcagGTGCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAATCTGCTGATAACTGCATAAAAACG
upper sequence: GLYMA03G32710.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 5
gtaagttcgcctagttatctcggatttatcacaat-tttgatgcttttgaaattattaatttt-tgatctgataatcagGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATTAAAACG
|||||||| || | | ||| || | | ||| | | ||||| | | | ||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||
gtaagttcatctttcttctttctgaatattgcagtgtccaatgttccc----tctctaattctataacatgaatttcagGTCCTTTTCAAGCTTGTTGTGATTACCGTACTTGTAATTGCAGAGTCTGCTGATAACTGCATAAAAACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatttatcacaattttgatgcttttgaaattattaatttttgatctgataatcagGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATTAAAACG
aattttgatgcttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcgcctagttatctcggatttatcacaattttgatgcttttgaaattattaatttttgatctgataatcagGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATTAAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT