1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgcatgaaatttccaaggcacgcccacttgtctcttatggttgttgttccttttttcatggtatgatctgatacagttctctcctattttctatgttagATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAACCTGGCATTGAAACATTTAAGGCAT
species | Glycine max |
transcript | GLYMA03G32350.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG ATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGEST: gi|57576032|gb|CX549003.1|CX549003
genomic: CTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGgtattaactc ... tctatgttagATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAG
EST: CTTTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG ATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGEST: gi|58024609|gb|CX711350.1|CX711350
genomic: CTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGgtattaactc ... tctatgttagATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAG
EST: CTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG ATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAG
genomic: CTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGgtattaactc ... tctatgttagATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAG
tgttccttttttcatggtatgatctgatacagttctctcctattttctatgttagATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAACCTGGCATTGAAACATTTAAGGCAT
atctgat putative branch site (score: 4)
ttctctcctattttct putative PPT
tattttctatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatgaaatttccaaggcacgcccacttgtctcttatggttgttgttccttttttcatggtatgatctgatacagttctctcctattttctatgttagATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAACCTGGCATTGAAACATTTAAGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- gcatgaa
- - - - - -ttccaag
- - - - - - - - - -cacgccc
- - - - - - - - - - - - - - - - - cttatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct