1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagtaatctctcatctgtttttatatctattttgcattgcatggcagcactgtattctgctaattccactctatcttcattcttcaacttcaacttattataaacaattctgcatttcagGTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGTAAGGTAGACGAGGATCTTGGTGCTCCTCTCTCTTGACTGTTAAATTTAT
species | Glycine max |
transcript | GLYMA03G32200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTTTCAATTGTAAAATTCTTCCTACTTTGCTTCAGGAAGAG GTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGTEST: gi|14991445|gb|BI317118.1|BI317118
genomic: TCTTGTTTCAATTG-AAAA-TCTTCCTACTTTGCTTCAGGAAGAGgtagtaatct ... tgcatttcagGTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGT
EST: TACACGATCTTGTTTCAATTGAAAATCTTCCTACTTTGCTTCAGGAAGAG GTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGGEST: gi|37997184|gb|CF808773.1|CF808773
genomic: TACACGATCTTGTTTCAATTGAAAATCTTCCTACTTTGCTTCAGGAAGAGgtagtaatct ... tgcatttcagGTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGT
EST: TACACGATCTTGTTTCAATTGAAAATCTTCCTACTTTGCTTCAGGAAGAG GTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGT
genomic: TACACGATCTTGTTTCAATTGAAAATCTTCCTACTTTGCTTCAGGAAGAGgtagtaatct ... tgcatttcagGTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGT
ccactctatcttcattcttcaacttcaacttattataaacaattctgcatttcagGTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGTAAGGTAGACGAGGATCTTGGTGCTCCTCTCTCTTGACTGTTAAATTTAT
ttcaacttattataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaatctctcatctgtttttatatctattttgcattgcatggcagcactgtattctgctaattccactctatcttcattcttcaacttcaacttattataaacaattctgcatttcagGTTCTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGTAAGGTAGACGAGGATCTTGGTGCTCCTCTCTCTTGACTGTTAAATTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC