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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacttctttccattttttcttttaacatttatttttagcacccattaataaagtctaccacccccttcccccataaacattatgagaaatagtcatgtttgatttggatttctagtattttgtactcagcttctgaggtgattttacagGCAGAATGGAAACGCAAAATTGATGGCATAGGTGGGGTGTTTCATGCAAAAGTAAATAAAG

Basic information

species Glycine max
transcript GLYMA03G31820.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684852|gb|AW755500.1|AW755500
EST:     ATTTGCGAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGACTCAATT                         GCAGAATGGAAACGCAAAATTGATGGCATAGGTGGGGTGTTTCATGCAAAA
genomic: ATTTGCGAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGACTCAATTgtattacttc ... gattttacagGCAGAATGGAAACGCAAAATTGATGGCATAGGTGGGGTGTTTCATGCAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttgatttggatttctagtattttgtactcagcttctgaggtgattttacagGCAGAATGGAAACGCAAAATTGATGGCATAGGTGGGGTGTTTCATGCAAAAGTAAATAAAG
  gtttgat  putative branch site (score: 5)
             atttctagtatttt  TA-rich tract