1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgacattaagtgaagttaccgaacagatatataagttgcaccttgagaattgaggcaggcgatgtgggtcttccaaacattaattccattattttgtagGGTGAAATGCAACAATTACGTGATAAATTGGCTATAGCTGAGCGCACTGCAAAGGCAGAGGCTCAAATGAAG
species | Glycine max |
transcript | GLYMA03G28310.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGTGATGCCAGTGAAGCAGTGGCTAGAAGAAAGAAAATTTTTTCAG GGTGAAATGCAACAATTACGTGAEST: gi|192298920|gb|FG987665.1|FG987665
genomic: ATAAAGTGATGCCAGTGAAGCAGTGGCTAGAAGAAAGAAAATTTTTTCAGgcatgtgaac ... tattttgtagGGTGAAATGCAACAATTACGTGA
EST: ATAAAGTGATGCCAGTGAAGCAGTGGCTCGAAGAAAGAAAATTTTTTCAG GGTGAAATGCAACAATTACGTGATAAATTGGCTATAGCTGAGCGCACTGCA
genomic: ATAAAGTGATGCCAGTGAAGCAGTGGCTAGAAGAAAGAAAATTTTTTCAGgcatgtgaac ... tattttgtagGGTGAAATGCAACAATTACGTGATAAATTGGCTATAGCTGAGCGCACTGCA
gagaattgaggcaggcgatgtgggtcttccaaacattaattccattattttgtagGGTGAAATGCAACAATTACGTGATAAATTGGCTATAGCTGAGCGCACTGCAAAGGCAGAGGCTCAAATGAAG
cattaat putative branch site (score: 3)
ttccatt CT-rich tract
aaacattaattccatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacattaagtgaagttaccgaacagatatataagttgcaccttgagaattgaggcaggcgatgtgggtcttccaaacattaattccattattttgtagGGTGAAATGCAACAATTACGTGATAAATTGGCTATAGCTGAGCGCACTGCAAAGGCAGAGGCTCAAATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - -tgcacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtggg