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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatttcctcaaaataagttaaaccaaacatccactaagtttcttactaacaaagtgaaaaaaattgtgtttgttttctaattgaatatttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGCAA

Basic information

species Glycine max
transcript GLYMA03G27460.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796787|gb|AW782181.1|AW782181
EST:     TACTGCACCAATATGGGTATTTAATAATG                         GTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC
genomic: TACTGCACCAATATGGGTATTTAATAATGgtaattttat ... ttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC
EST: gi|21888705|gb|BQ741918.1|BQ741918
EST:     CTTGCGGAGGACTTGGGTACTGCACCAATATGGGTATTTAATAATG                         GTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC
genomic: CTTGCGGAGGACTTGGGTACTGCACCAATATGGGTATTTAATAATGgtaattttat ... ttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC
EST: gi|9819476|gb|BE554989.1|BE554989
EST:     CTTGCGGAGGACTTGGGTACTGCACCAATATGGGTATTTAATAATG                         GTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC
genomic: CTTGCGGAGGACTTGGGTACTGCACCAATATGGGTATTTAATAATGgtaattttat ... ttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC
EST: gi|21600500|gb|BQ610831.1|BQ610831
EST:     CTTGCGGAGGACTTGGGTACTGCACCAATATGGGTATTTAATAATG                         GTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC
genomic: CTTGCGGAGGACTTGGGTACTGCACCAATATGGGTATTTAATAATGgtaattttat ... ttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactaacaaagtgaaaaaaattgtgtttgttttctaattgaatatttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCTGCGGTCTTACCTCTTGTGCAA
                                            tttcgtttt  CT-rich tract
             aaaaaaattgtgtttg  TA-rich tract