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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgccttagttgaaaaaaagtatggattttgacttaaaatttgctgtaggcttcacttatctgttctttgacatgtaataagaagttctttatcttcttttctcacagGGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCT

Basic information

species Glycine max
transcript GLYMA03G23870.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125744|gb|BG316314.1|BG316314
EST:     ATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAG                         GGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAA
genomic: ATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAGgtaagtttgc ... tttctcacagGGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAA
EST: gi|22525661|gb|BU084472.1|BU084472
EST:     ACTTATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAG                         GGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAA
genomic: ACTTATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAGgtaagtttgc ... tttctcacagGGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAA
EST: gi|151407763|gb|EV277578.1|EV277578
EST:     AGTCACTTATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAG                         GGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGG
genomic: AGTCACTTATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAGgtaagtttgc ... tttctcacagGGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGG
EST: gi|23053050|gb|BU577541.1|BU577541
EST:     AGTCACTTATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAG                         GGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAA
genomic: AGTCACTTATTGATGAACTGGCTGCTACTAAAGTCTCACTTGTTGTCCAGgtaagtttgc ... tttctcacagGGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttatctgttctttgacatgtaataagaagttctttatcttcttttctcacagGGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCT
            ctttgac  putative branch site (score: 4)
                                ttctttatcttctttt  putative PPT
                   atgtaataa  TA-rich tract