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...tacaagtttagtcagtataggtattaattttaacctaagcttctcaatgcatttcttgtaaatagctgcttattgcacttctatggttctgaccctgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACCAATCCCTCCACATTGGCAGTTAAAAATCCCTTTGAAAGAGCAAAGTTAG
species | Glycine max |
transcript | GLYMA03G22450.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATTGTCACTAACTTCTCCTCTGATGTGAAG GATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACCEST: gi|193339466|gb|FK304799.1|FK304799
genomic: AGATTGTCACTAACTTCTCCTCTGATGTGAAGgtaactgagt ... gaccctgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACC
EST: AGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAG GATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACCEST: gi|192305988|gb|FG993620.1|FG993620
genomic: AGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGgtaactgagt ... gaccctgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACC
EST: AGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAG GATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACCEST: gi|207813907|gb|GD785142.1|GD785142
genomic: AGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGgtaactgagt ... gaccctgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACC
EST: AGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAG GATGCTGAGGCTTATGCACACCTTCEST: gi|207790991|gb|GD760504.1|GD760504
genomic: AGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGgtaactgagt ... gaccctgcagGATGCTGAGGCTTATGCACACCTTC
EST: AGATTGTCACTTAACTTTCTCCTCTGATGTGAAG GATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACC
genomic: AGATTGTCAC-TAAC-TTCTCCTCTGATGTGAAGgtaactgagt ... gaccctgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACC
aatgcatttcttgtaaatagctgcttattgcacttctatggttctgaccctgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACCAATCCCTCCACATTGGCAGTTAAAAATCCCTTTGAAAGAGCAAAGTTAG
ttctgac putative branch site (score: 2)
atttcttgtaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaagtttagtcagtataggtattaattttaacctaagcttctcaatgcatttcttgtaaatagctgcttattgcacttctatggttctgaccctgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTGGCACCTGAATACACCAATCCCTCCACATTGGCAGTTAAAAATCCCTTTGAAAGAGCAAAGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - gcttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactt